Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs7956315 chr12:21637964 A/C 2.7E-8 174 25.28 26.47 2.28 KM Plot
PCPG rs79569830 chr2:242535994 C/G 3.49E-5 175 25.87 29.57 20.2 KM Plot
PCPG rs79597287 chr16:89970753 A/AT 0.000161 172 25.97 20.37 36.37 KM Plot
PCPG rs79617063 chr2:121547754 T/G 0.000225 176 25.53 24.23 59.77 KM Plot
PCPG rs79617366 chr7:1111958 G/C 0.000233 176 25.87 24.5 49.58 KM Plot
PCPG rs7962175 chr12:114394278 C/T 7.58E-6 177 25.87 24.7 25.17 KM Plot
PCPG rs79638085 chr17:1410680 T/C 1.46E-5 174 25.05 25 25.17 KM Plot
PCPG rs79647445 chr5:171530760 T/A 0.000107 176 25.87 20.37 17.12 KM Plot
PCPG rs79654058 chr16:56470389 T/C 0.000204 177 25.17 26.97 36.37 KM Plot
PCPG rs7966356 chr12:113578334 A/C 0.000247 173 25.28 24.5 39.12 KM Plot
PCPG rs79690969 chr16:90076227 T/A 1.12E-8 174 25.77 20.28 6.62 KM Plot
PCPG rs79698649 chr16:56460646 C/G 0.00021 175 25.4 26.97 36.37 KM Plot
PCPG rs7970122 chr12:113579130 A/T 0.000268 171 25.17 25.02 39.12 KM Plot
PCPG rs7971365 chr12:114391280 C/T 7.58E-6 177 25.87 24.7 25.17 KM Plot
PCPG rs79718165 chr12:56644251 C/T 9.68E-8 178 25.17 29.13 0.8 KM Plot